serve

Webserver for interactive spatial visualisation and querying of malva indexes

usage: malva serve [-h] [--index-in INDEX_IN] [--uuid UUID] [--annotation ANNOTATION] [--port PORT] [--address ADDRESS] [--max-mem MAX_MEM] [--max-len MAX_LEN] [--rescale-coords RESCALE_COORDS]

Named Arguments

--index-in

Valid directory where the malva index (and metadata) is located.

The directory must contain the file malva_index.h5. Otherwise, an exception will be thrown.

--uuid

UUID for the server

--annotation

Path to a tippecanoe annotation (vector-tile GeoJSON)

--port

Port where the webserver will be listening to

Default: 8888

--address

Address where the webserver will be available at

Default: '127.0.0.1'

--max-mem

Maximum allowed memory usage for the k-mer index (default: 1M)

Default: '1M'

--max-len

Maximum allowed length for DNA/RNA queries

Default: 1000

--rescale-coords

Provided coordinate units (from the index) are rescaled by this factor

Default: 1